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Freemius vs payment processors – which one to choose?

Over 1,000 software businesses use Freemius to help them sell globally. Here’s how it compares to building around a standard payment processor.

If you’re selling software, you need a way to collect payments. One option is to use a traditional payment processor (like Stripe or PayPal) and stitch together the rest of the billing stack yourself.

The other is to use a merchant of record (MoR), which takes on a broader operational role, including legal, compliance, and tax responsibilities.

This overview lays out what each option covers and what falls on your plate. Use it to weigh the real trade-offs and pick the setup that fits your goals.

Merchant of record
Payment processor
Accept payments
Cross-border transactions+1.5% extra cost
Subscription management+0.7% extra cost
Invoicing+0.4% extra cost
Legal seller of record
Tax registration and filing
Tax calculation+0.5% extra cost
Fraud preventionExtra cost
Disputes handlingOn you + $15–$30 per dispute
Chargeback defense
Software licensing
Localization out-of-the-box
Built-in security & privacy compliance PCI, GDPR, CCPA, PECR

Why DIY payment processing costs more than you think

Most founders assume:

Stripe fees (2.9% + 30¢) < merchant of record fees (≈5%–10%) Stripe is cheaper.

On paper, sure. But once you start selling subscriptions globally, the math flips.

The global pricing reality

Let’s run the numbers on a typical micro-SaaS doing $10,000 in sales at $19.99 per subscription (≈500 transactions).

Sales tax exposure

~25% of transactions taxed, avg. 10% rate

Disputes

0.7% dispute rate ≈ 3–4 disputes

Sales distribution

30% US, 30% Europe, 40% rest of world
DescriptionAmount (USD)
Product sales volume$10,000 500 transactions
VAT/GST/Sales Tax$250 25% avg taxed transactions 10% avg tax rate (ranging from 4%–27%)
Total volume$10,250
Base transaction fee (2.9% + 30¢)$447.25 $10,250 x 2.9% + 500 x $0.3
International card (+1.15%)$107.62 to $146.06 US sellers: 70%+ cross-border Non-US seller: 95%+ cross-border
Subscription payment – Stripe Billing (+0.7%)$71.75
Invoicing (+0.4%)$41
Tax calc & monitoring – Stripe Tax (+0.5%)$51.25
Fraud protection – Stripe Radar (20¢)$100 $0.20 × 500 transactions
Dispute fees ($30) $15 fee + $15 countering fee$105 3.5 disputes (0.7% avg dispute rate)
Total fees before payout$923.87 to $962.31
Your net before payout fees$8,967.69 to $9,006.13 $10,000 – total_fees_before_payout – $70 (3.5 chargebacks)
Payout currency conversion FX (1%–4%) E.g., if you sell in USD but get paid in EUR Fees vary by country $89.68 to $360.25
Total fees$923.87 to $1,322.56
Stripe’s effective rate9.24% to 13.23%
Your net$8,609 to $9,006.13
The real cost isn’t 3%.

It’s 9%+ once you sell globally.

That’s 3× higher than most founders think — and that’s before the weeks of dev time to wire up subscriptions, taxes, invoices, and retries.

Even if you cut corners (no invoices, no taxes early on), you’re still at 8.32%+.

Merchant of record

With an MoR like Freemius, you’re looking at a flat 8%–10% cut — but that already includes:

Global tax compliance
Dispute handling
Fraud protection
Subscriptions, invoicing, licensing, etc.
Faster setup: first sale in minutes, not weeks

On $10K in sales, you’d net $9,000–$9,200.

4.7%

+ gateway fees

  • Immediate account approval
  • Avg 24-hour support ticket turnaround
  • Free¹ wire payouts² wherever you are
  • Automated sales tax compliance
  • Focused exclusively on selling software
  • Hands-on migration assistance

¹ Wire payouts may incur intermediate bank fees.
² Supported payouts through Wire, Wise, Payoneer, and PayPal.

  • 0% fee on the tax component
  • No extra % for cart recovery
  • No extra % for failed renewals recovery
  • No setup fees, monthly fees, or hidden fees

Processing large payment volumes?

What’s included?

Merchant of record

  • Global payment processing
  • Credit cards & PayPal
  • Automated sales tax and VAT
  • Fraud protection & risk management
  • Localized checkout & multi-currency
  • Simplified reporting & reconciliation
  • Chargeback & dispute management
  • PCI compliance out of the box

Selling software

  • Webhooks
  • REST API
  • Software licensing

Self-served customer portal

  • Plan changes and upgrades
  • Payment method updates
  • Retention flow

Subscriptions & recurring billing

  • Automated renewal reminders
  • Multi-seat and multi-license support
  • Smart card updates
  • Failed renewals recovery
  • Trials

Marketing

  • Affiliate Platform
  • Cart abandonment recovery
  • Coupons and discounts
  • Subscription recovery campaigns
  • Verified reviews collection

Solution

SaaS & software

SaaS, desktop apps, Chrome extensions, Electron apps

WordPressi+2.3%

Plugins, add-ons, themes, templates, widgets, kits

  • Software licensing
  • Multi-site licenses
  • Automatic updates
  • Release management
  • Beta versions
  • Staged rollouts
  • Single sign-on with WordPress
  • Sell from WP Admin Dashboard
  • Sell add-ons & bundles
  • Opt-in & usage tracking
  • Audience analytics
  • Deactivation feedback
  • WP.org compliant GPL SDK
  • WP.org review automation
Even if the raw fees look a little lower, there’s more to the equation.

Hidden drains with DIY setups

Using Stripe, PayPal, or similar payment providers gives you full control over the implementation, but it also means assembling the entire commercial infrastructure yourself. That approach can work if you have the time and resources to manage it. But it’s worth being aware of some common trade-offs.

Slower time to launch: Building and testing your own billing stack usually adds weeks before you can sell.

Conversion impact: A generic checkout often underperforms; even a small drop in conversion or renewal rates can wipe out any fee savings.

Global complexity: Expanding to new regions means registering for tax in each one (dozens of US states, VAT in Europe, GST elsewhere).

Ongoing maintenance: Refund flows, dispute handling, tax law changes, and subscription edge cases require continuous engineering attention.

So, which one is better?

There’s no universal answer here. Just like in software development, the right setup depends on your goals, team size, and available resources.
Payment processors and merchants of record come with different trade-offs, and both can make sense depending on your situation.

Here’s a quick rule of thumb:

Stick with a payment processor if:

  • You’re selling locally only
  • You want full control of the billing logic
  • You’re okay trading product velocity for infrastructure maintenance

Go with a merchant of record if:​

  • You want to sell globally without registering everywhere
  • You don’t want to babysit tax, invoicing, and compliance
  • You prefer not to manage multiple third-party tools for subscriptions, licensing, and customer management
  • You’d rather spend dev cycles on your product, not payment plumbing

Why software businesses go with Freemius over other MoR platforms

Most merchant of record (MoR) platforms were built to serve the broad world of digital products—ebooks, online courses, design assets, you name it. They focus primarily on billing and treat creators only as customers, offering a transactional tool to process payments.

Freemius is built differently. We’re purposefully focused on software — nothing else. We look at the full customer lifecycle, not just the checkout. Our mission is to maximize your revenue, reduce your churn, and guide you from launch to scale to exit. 

We’re not just your payments platform. We’re your growth team.

01

Platform: Built for software growth

Freemius is a modern, developer-friendly commercial infrastructure that goes way beyond billing.

We optimize every critical touchpoint in your customer journey:

  • Pre-purchase exit-intent coupons
  • Cart abandonment recovery
  • Failed renewal win-backs
  • Pre-cancellation retention flows
  • Cancellation surveys with targeted discounting

All designed to boost conversion, reduce churn, and increase LTV—out of the box.

02

Team: We win together

Where other platforms offer generic support, we offer deep partnership.

  • You get developer-to-developer support from people who understand what it means to run a software business.
  • You get strategic advice on pricing, packaging, business models, product decisions, marketing, and more.
  • We’re in it with you. When you grow, we grow.

03

Community:
You’re not alone

When you join Freemius, you tap into an ecosystem that multiplies your success.

We optimize every critical touchpoint in your customer journey:

  • Makers community: 1,800+ makers in our Slack group and real-world Makers’ Meetups where founders help each other grow.
  • Affiliates: A built-in affiliate network of creators, YouTubers, and content marketers — plus warm intros when it makes sense.
  • Business connections: From investors to acquirers, we know the people you’ll want to meet when it’s time to exit. And we’ll help you get there.
“If they see an opportunity to help us increase sales, they'll reach out to us. And whenever we need them, Freemius is there to help us grow."
“The freedom Freemius has allowed us resulted in more time. We're no longer stressing about licenses or payments, which allowed us to grow."
“Freemius has taken care of everything. Licensing, payment processing, refunds management, prorating, taxes, analytics — it's all taken care of."
“With Freemius it's much easier. I have access to the data that potential buyers are going to look for."
“Freemius takes care of everything from the moment of purchase. Everything is handled through this one platform, allowing you to focus on your business."

5 minutes from signup to your first sale!

Getting started with Freemius is dead simple:

2

Add your product

3
Set up a plan and price
4

Grab your no-code checkout link → start accepting real payments

That’s it. No lengthy approval process. No waiting around. You can start selling in minutes.

Laura Elizabeth
Founder of Client Portal

Laura Elizabeth
Founder of Client Portal

“Freemius makes my life easier and earns me more money. They handle all sales tax which is yet another headache that I don’t need to deal with. I’m finally able to focus on improving the product and helping customers which is exactly what I wanted.”

Thinking about migrating to Freemius?

Here’s how it works
We’ve spent over a decade helping software companies switch to Freemius, and we’ve made the process smooth and predictable.

You’re not on your own

Our team walks you through every step

Faster than you think

Most migrations are done in just 2–3 weeks (roughly 1 week of net effort)

Zero disruption

Your customers keep their subscriptions, renewals, and access without noticing a thing

Independent from your old processor

We don’t need Stripe, PayPal, or anyone else involved

You’re not on your own

Our team walks you through every step

Faster than you think

Most migrations are done in just 2–3 weeks (roughly 1 week of net effort)

Zero disruption

Your customers keep their subscriptions, renewals, and access without noticing a thing

Independent from your old processor

We don’t need Stripe, PayPal, or anyone else involved

Our simple two-step process

1

Data import

We copy all the relevant data from Stripe/PayPal into Freemius.
2

Ongoing renewals sync​

For active auto-renewing subscriptions, we connect your existing processor into Freemius via webhooks so every renewal syncs seamlessly.
Schedule a call with a migration specialist. We’ll build you a free, custom step-by-step migration plan tailored to your setup. No risk, no strings attached — you decide if and when to move forward.

Our simple two-step process

Getting started with Freemius is dead simple:

1

Data import

We copy all the relevant data from Stripe/PayPal into Freemius.
2

Ongoing renewals sync

For active auto-renewing subscriptions, we connect your existing processor into Freemius via webhooks so every renewal syncs seamlessly.

Schedule a call with a migration specialist. We’ll build you a free, custom step-by-step migration plan tailored to your setup. No risk, no strings attached — you decide if and when to move forward.

Florian Vizethum
Founder & CEO at AAWP

Florian Daugalies
Founder & CEO at AAWP

“Before switching to Freemius, managing subscriptions felt like juggling too many things at once — taxes, renewals, licenses going out of sync, you name it. Freemius not only handles the tough stuff, but their team also helped migrate all of my active subscriptions seamlessly, so I didn’t lose a single customer. Now I can focus on improving my product instead of fighting billing headaches.”

FAQ

Will switching from a payment processor to Freemius disrupt my existing customers?
No. Our migration specialists ensure zero disruption to current subscriptions with our guided transition process.
Most integrations only take a few hours. Our team provides direct support throughout.
Absolutely. Freemius supports all modern software pricing approaches: subscriptions, lifetime deals, tiered and usage-based models, feature gating, and hybrid methods.
That becomes our responsibility, not yours. Our team continuously monitors regulatory changes worldwide and automatically implements updates.

Enjoy peace of mind by eliminating software sales tax liabilities

Monthly grossProgressive rev-share *
0 - $50,0004.7%
$50,000 - $60,0004.5%
$60,000 - $70,0004.0%
$70,000 - $80,0003.0%
$80,000 - $90,0002.0%
$90,000 - $100,0001.0%
$100,000 +0.5%

* For example, if you earn $67k in a given month, the first $50k is subject to a 4.7% share, the next $10k to a 4.5% share, and the remaining $7k to a 4.0% share.